2005 CXS Refereed Publications

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  • 1. Akulshin, A. M., A. Lezama, et al. (2005). "'Storage of light' in an atomic medium using electromagnetically induced absorption." Journal of Physics B: Atomic, Molecular and Optical Physics 38(23): L365-L374.
  • 2. Akulshin, A. M., A. I. Sidorov, et al. (2005). "Pulses of "fast light," the signal velocity, and giant Kerr nonlinearity." Laser Physics 15(9): 1252-1256.
  • 3. Ampem-Lassen, E., S. T. Huntington, et al. (2005). "Refractive index profiling of axially symmetric optical fibers: A new technique." Optics Express 13(9): 3277-3282.
  • 4. Arhatari, B. D., K. A. Nugent, et al. (2005). "Phase contrast radiography. II. Imaging of complex objects." Review of Scientific Instruments 76(11): 1-6.
  • 5. Barber, R. L., M. K. Ghantasala, et al. (2005). "Optimisation of SU-8 processing parameters for deep X-ray lithography." Microsystem Technologies 11(4-5): 303-310.
  • 6. Belpassi, L., F. Tarantelli, et al. (2005). "Computational strategies for a four-component Dirac-Kohn-Sham program: Implementation and first applications." Journal of Chemical Physics 122(18): 1-13.
  • 7. Berglez, J., P. Pilling, et al. (2005). "Purification, properties, and crystallization of Saccharomyces cerevisiae dihydropterin pyrophosphokinase-dihydropteroate synthase." Protein Expression and Purification 41(2): 355-362.
  • 8. Bray, P. G., S. Deed, et al. (2005). "Primaquine synergises the activity of chloroquine against chloroquine-resistant P. falciparum." Biochemical Pharmacology 70(8): 1158-1166.
  • 9. Bray, P. G., R. E. Martin, et al. (2005). "Defining the role of PfCRT in Plasmodium falciparum chloroquine resistance." Molecular Microbiology 56(2): 323-333.
  • 10. Briedis, D., K. K. W. Siu, et al. (2005). "Analyser-based mammography using single-image reconstruction." Physics in Medicine and Biology 50(15): 3599-3611.
  • 11. Clayton, A. H. A., N. Klonis, et al. (2005). "Dual-channel photobleaching FRET microscopy for improved resolution of protein association states in living cells." European Biophysics Journal 34(1): 82-90.
  • 12. Cosgriff, E. C., C. T. Chantler, et al. (2005). "Atomic cluster-structure calculations of the X-ray near-edge absorption of silver." Physics Letters, Section A: General, Atomic and Solid State Physics 343(1-3): 174-180.
  • 13. Cull, J., G. Jung, et al. (2005). "Cavity detection using single-fold frequency analysis." Journal of Environmental and Engineering Geophysics 10(2): 80-81.
  • 14. Curl, C. L., C. J. Bellair, et al. (2005). "Refractive index measurement in viable cells using quantitative phase-amplitude microscopy and confocal microscopy." Cytometry Part A 65(1): 88-92.
  • 15. Dao, L. V., M. T. T. Do, et al. (2005). Femtosecond multidimentional spectroscopy to study carrier dynamics of photonic materials. Conference on Optoelectronic and Microelectronic Materials and Devices, Proceedings, COMMAD, Bribane, QLD.
  • 16. Dao, L. V., C. N. Lincoln, et al. (2005). "Spectrally resolved two-color femtosecond photon echoes: A new multidimensional technique for studying molecular dynamics." Laser Physics 15(9): 1257-1268.
  • 17. Darahanau, A. V., A. Y. Nikulin, et al. (2005). "Application of quantitative X-ray phase retrieval from Fraunhofer diffraction data to nano-resolution profiling of materials." Optics Communications 251(1-3): 100-108.
  • 18. Darahanau, A. V., A. Y. Nikulin, et al. (2005). "Nano-resolution profiling of micro-structures using quantitative X-ray phase retrieval from Fraunhofer diffraction data." Physics Letters, Section A: General, Atomic and Solid State Physics 335(5-6): 494-498.
  • 19. De Jonge, M. D., C. Q. Tran, et al. (2005). "Measurement of the x-ray mass attenuation coefficient and determination of the imaginary component of the atomic form factor of molybdenum over the 13.5-41.5-keV energy range." Physical Review A - Atomic, Molecular, and Optical Physics 71(3): 1-16.
  • 20. Dilanian, R. A. and A. Y. Nikulin (2005). "X-ray diffraction imaging of Al2 O3 nanoparticles embedded in an amorphous matrix." Applied Physics Letters 87(16): 1-3.
  • 21. El-Kabbani, O., V. Carbone, et al. (2005). "Structure of the tetrameric form of human L-xylulose reductase: Probing the inhibitor-binding site with molecular modeling and site-directed mutagenesis." Proteins: Structure, Function and Genetics 60(3): 424-432.
  • 22. El-Kabbani, O., V. Carbone, et al. (2005). "Structure of aldehyde reductase holoenzyme in complex with the potent aldose reductase inhibitor fidarestat: Implications for inhibitor binding and selectivity." Journal of Medicinal Chemistry 48(17): 5536-5542.
  • 23. Francis, P. S., N. W. Barnett, et al. (2005). "Near-infrared chemiluminescence from the oxidation of ammonia in aqueous alkaline solution." Luminescence 20(6): 442-444.
  • 24. Hall, C. J., M. Ibison, et al. (2005). Progress in medical diffraction enhanced imaging at the UK synchrotron radiation source. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, San Diego, CA.
  • 25. Humphries, A. D., I. C. Streimann, et al. (2005). "Dissection of the mitochondrial import and assembly pathway for human Tom40." Journal of Biological Chemistry 280(12): 11535-11543.
  • 26. Ibison, M., K. C. Cheung, et al. (2005). "Diffraction-enhanced imaging at the UK synchrotron radiation source." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 181-186.
  • 27. Kirste, L., K. M. Pavlov, et al. (2005). "Analysis of the mosaic structure of an ordered (Al,Ga)N layer." Journal of Applied Crystallography 38(1): 183-192.
  • 28. Kitchen, M. J., R. A. Lewis, et al. (2005). "Phase contrast X-ray imaging of mice and rabbit lungs: A comparative study." British Journal of Radiology 78(935): 1018-1027.
  • 29. Kitchen, M. J., D. Paganin, et al. (2005). "Analysis of speckle patterns in phase-contrast images of lung tissue." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 240-246.
  • 30. Knuepfer, E., M. Rug, et al. (2005). "Trafficking determinants for PfEMP3 export and assembly under the Plasmodium falciparum-infected red blood cell membrane." Molecular Microbiology 58(4): 1039-1053.
  • 31. Lawrence, M. C., P. Iliades, et al. (2005). "The three-dimensional structure of the bifunctional 6-hydroxymethyl-7,8- dihydropterin pyrophosphokinase/dihydropteroate synthase of Saccharomyces cerevisiae." Journal of Molecular Biology 348(3): 655-670.
  • 32. Leifert, W. R., A. L. Aloia, et al. (2005). "G-protein-coupled receptors in drug discovery: Nanosizing using cell-free technologies and molecular biology approaches." Journal of Biomolecular Screening 10(8): 765-779.
  • 33. Leifert, W. R., A. L. Aloia, et al. (2005). "GPCR-induced dissociation of G-protein subunits in early stage signal transduction." Molecular Membrane Biology 22(6): 507-517.
  • 34. Lewis, R. A., N. Yagi, et al. (2005). "Dynamic imaging of the lungs using x-ray phase contrast." Physics in Medicine and Biology 50(21): 5031-5040.
  • 35. Marti, M., J. Baum, et al. (2005). "Signal-mediated export of proteins from the malaria parasite to the host erythrocyte." Journal of Cell Biology 171(4): 587-592.
  • 36. McBride, W., N. L. O'Leary, et al. (2005). "Astigmatic electron diffraction imaging: A novel mode for structure determination." Acta Crystallographica Section A: Foundations of Crystallography 61(3): 321-324.
  • 37. Moore, E. G., P. V. Bernhardt, et al. (2005). "Tuning the photophysical behavior of luminescent cyclam derivatives by cation binding and excited state redox potential." Journal of Physical Chemistry A 109(17): 3788-3796.
  • 38. Nesterets, Y. I., T. E. Gureev, et al. (2005). "Comparison of three theoretical approaches to quantitative analyzer-based imaging." Bulletin of the Russian Academy of Sciences: Physics 69(2): 246-252.
  • 39. Nesterets, Y. I., T. E. Gureyev, et al. (2005). "Polychromaticity in the combined propagation-based/analyser-based phase-contrast imaging." Journal of Physics D: Applied Physics 38(24): 4259-4271.
  • 40. Nesterets, Y. I., S. W. Wilkins, et al. (2005). "On the optimization of experimental parameters for x-ray in-line phase-contrast imaging." Review of Scientific Instruments 76(9): 1-16.
  • 41. Nugent, K. A., A. G. Peele, et al. (2005). Coherent diffractive imaging using focused beams. Proceedings of SPIE - The International Society for Optical Engineering, San Diego, CA.
  • 42. Nugent, K. A., A. G. Peele, et al. (2005). "Diffraction with wavefront curvature: A path to unique phase recovery." Acta Crystallographica Section A: Foundations of Crystallography 61(3): 373-381.
  • 43. Pavlov, K. M., T. E. Gureyev, et al. (2005). "Unification of analyser-based and propagation-based X-ray phase-contrast imaging." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 163-168.
  • 44. Peele, A. G., F. De Carlo, et al. (2005). "X-ray phase contrast tomography with a bending magnet source" Review of Scientific Instruments 76(8): 1-5.
  • 45. Peele, A. G., A. P. Mancuso, et al. (2005). "Phase retrieval from coherent soft X-ray optics." Journal of Electron Spectroscopy and Related Phenomena 144-147: 1171-1173.
  • 46. Peele, A. G., B. Y. Shew, et al. (2005). "Overcoming SU-8 stiction in high aspect ratio structures." Microsystem Technologies 11(2-3): 221-224.
  • 47. Punegov, V. I., D. V. Kazakov, et al. (2005). "Synchrotron X-ray scattering from InGaN-nanostructures: Experiment and numerical simulation modeling." Poverkhnost Rentgenovskie Sinkhronnye i Nejtronnye Issledovaniya(8): 25-31.
  • 48. Punegov, V. I. and Y. I. Nesterets (2005). "Angular distribution of scattered intensity in conditions of X-ray diffraction on a crystal modulated by a surface acoustic wave." Poverkhnost Rentgenovskie Sinkhronnye i Nejtronnye Issledovaniya(2): 98-102.
  • 49. Quiney, H. M., K. A. Nugent, et al. (2005). "Iterative image reconstruction algorithms using wave-front intensity and phase variation." Optics Letters 30(13): 1638-1640.
  • 50. Quiney, H. M. and S. Wilson (2005). "Literate programming in quantum chemistry: A collaborative approach to the development of theory and computer code." Molecular Physics 103(2-3): 389-399.
  • 51. Quiney, H. M. and S. Wilson (2005). "Literate programming in quantum chemistry: A simple example." International Journal of Quantum Chemistry 104(4 SPEC. ISS.): 430-445.
  • 52. Ramachandran, G., T. A. Smith, et al. (2005). "Fluorescence studies on the conjugated polyelectrolyte DPS-PPV [poly (2,5-dipropoxy sulphonato para phenylene) vinylene] in aqueous solution." Synthetic Metals 152(1-3): 17-20.
  • 53. Rigley, S., L. Rigon, et al. (2005). "Absorption edge subtraction imaging for volumetric measurement in an animal model of malignant brain tumor." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 88-93.
  • 54. Satchell, J. F., R. L. Malby, et al. (2005). "Structure of glyceraldehyde-3-phosphate dehydrogenase from Plasmodium falciparum." Acta Crystallographica Section D: Biological Crystallography 61(9): 1213-1221.
  • 55. Siu, K. K. W., S. M. Butler, et al. (2005). "Identifying markers of pathology in SAXS data of malignant tissues of the brain." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 140-146.
  • 56. Siu, K. K. W., M. J. Kitchen, et al. (2005). "An improvement to the diffraction-enhanced imaging method that permits imaging of dynamic systems." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 169-174.
  • 57. Starling, T. R., C. J. Wellard, et al. (2005). Calculation of the exchange coupling in Si:P donor systems. Proceedings of SPIE - The International Society for Optical Engineering, Sydney.
  • 58. Stewart, C. R., A. A. Tseng, et al. (2005). "Oxidation of low density lipoproteins induces an amyloid-like cross b-conformation that is recognized by macrophages." Biochemistry 44(25): 9108-16
  • 59. Tormen, M., A. Carpentiero, et al. (2005). "Fabrication of three-dimensional stamps for embossing techniques by lithographically controlled isotropic wet etching." Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures 23(6): 2920-2924.
  • 60. Tran, C. Q., C. T. Chantler, et al. (2005). "Measurement of the x-ray mass attenuation coefficient of silver using the x-ray-extended range technique." Journal of Physics B: Atomic, Molecular and Optical Physics 38(1): 89-107.
  • 61. Tran, C. Q., A. G. Peele, et al. (2005). "Phase space density measurement of interfering X-rays." Journal of Electron Spectroscopy and Related Phenomena 144-147: 947-951.
  • 62. Tran, C. Q., A. G. Peele, et al. (2005). Synchrotron beam coherence: A spatially resolved measurement." Optics Letters 30(2): 204-206.
  • 63. Tran, C. Q., A. G. Peele, et al. (2005). "X-ray imaging: A generalized approach using phase-space tomography." Journal of the Optical Society of America A: Optics and Image Science, and Vision 22(8): 1691-1700.
  • 64. Turner, L. D., K. F. E. M. Domen, et al. (2005). "Diffraction-contrast imaging of cold atoms" Phys. Rev. A 72(031403): On line - unpaginated.
  • 65. Van Dao, L., M. T. T. Do, et al. (2005). Femtosecond nonlinear coherence spectroscopy of the blue band of GaN. Conference on Optoelectronic and Microelectronic Materials and Devices, Proceedings, COMMAD, Bribane, QLD.
  • 66. Van Dao, L. and P. Hannaford (2005). "Femtosecond nonlinear coherence spectroscopy of carrier dynamics in porous silicon." Journal of Applied Physics 98(8): 1-5.
  • 67. Van Dao, L., X. Wen, et al. (2005). "Time-resolved and time-integrated photoluminescence analysis of state filling and quantum confinement of silicon quantum dots." Journal of Applied Physics 97(1).
  • 68. Van Dao, L., X. Wen, et al. (2005). Time resolved and time integrated photoluminescence for study of optical properties of silicon quantum dots. Conference on Optoelectronic and Microelectronic Materials and Devices, Proceedings, COMMAD, Bribane, QLD.
  • 69. Vartanyants, I. A., I. K. Robinson, et al. (2005). "Coherent x-ray diffraction from quantum dots." Physical Review B - Condensed Matter and Materials Physics 71(24): 1-9.
  • 70. Vora, K. D., B. Y. Shew, et al. (2005). "Specification of mechanical support structures to prevent SU-8 stiction in high aspect ratio structures." Journal of Micromechanics and Microengineering 15(5): 978-983.
  • 71. Wang, J. Y., S. Whitlock, et al. (2005). "Perpendicularly magnetized, grooved GdTbFeCo microstructures for atom optics." Journal of Physics D: Applied Physics 38(22): 4015-4020.
  • 72. Wilkinson, S. J., K. D. Rogers, et al. (2005). "Small angle diffraction imaging for disease diagnosis." Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment 548(1-2): 135-139.
  • 73. Xu, P., X. Wen, et al. (2005). Two-photon optical characteristics of zinc oxide in bulk, low-dimensional and nano-forms. Proceedings of SPIE - The International Society for Optical Engineering, San Diego, CA.
  • 74. Yu, R. P., D. M. Paganin, et al. (2005). "Inferring nonlinear parabolic field equations from modulus data." Physics Letters, Section A: General, Atomic and Solid State Physics 341(1-4): 156-163.
  • 75. Yu, R. P., D. M. Paganin, et al. (2005). "Inferring the time-dependent complex Ginzburg-Landau equation from modulus data." Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 72(5): 1-13.

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