2009 CXS Publications

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  • 1. Abdelrahman, A., P. Hannaford, et al. (2009). "Adiabatically induced coherent Josephson oscillations of ultra-cold atoms in an asymmetric two-dimensional magnetic lattice." Optics Express 17: 24358-70.
  • 2. Abeywardena, M. Y., W. R. Leifert, et al. (2009). "Cardiovascular Biology of Interleukin-6’." Cardiovasc. Res, 2009, Cur.Pharm.Des 15: 1809-21.
  • 3. Akulshin, A., R. McLean, et al. (2009). "Coherent and collimated blue light generated by four-wave mixing in Rb vapour." Optics Express 17: 22861-70.
  • 4. Akulshin, A., R. McLean, et al. (2009). Electromagnetically induced absorption and transparency due to long lived Zeeman coherence in New Trends in Quantum Coherence and Nonlinear Optics. Horizons in World Physics. N. Y. R. Drampyan (Nova. 263: 1-43.
  • 5. Arhatari, B. D., K. Hannah, et al. (2009). "A Coherence Approach to Phase-Contrast Microscopy II: Experiment." Ultramicroscopy 109: 280-286.
  • 6. Awaja, F., B. Arhatari, et al. (2009). "The Investigation of Accelerated Thermal Degradation of Different Epoxy Resin Composites using X-ray Micro Computed Tomography and Optical Coherence Tomography, Polymer Degradation and Stability." 94 1814-1824.
  • 7. Awaja, F. and B. D. Arhatari (2009). "X-ray Micro Computed Tomography Investigation of Accelerated Thermal Degradation of Epoxy Resin/ Glass Microsphere Syntactic Foam, Composites part A:." Applied Science and Manufacturing 40: 1217-22.
  • 8. Baker, M. J., C. T. Webb, et al. (2009). "Structural and functional requirements for activity of the Tim9-Tim10 complex in mitochondrial protein import." Mol. Biol. Cell 20: 769-779.
  • 9. Balaur, E. and A. G. Peele (2009). "Tunnelling through diamond-like carbon nanofilms deposited by electron-beam-induced deposition." Thin Solid Films 517(6520-6526).
  • 10. Bell, S. C., M. Junker, et al. (2009). Ultra-cold plasma electron source. KOALA (Konference on Optics And Laser Applications) Student Conference, Sydney.
  • 11. Bell, S. C., D. V. Sheludko, et al. (2009). Electrons from cold atoms for diffractive imaging of biomolecules. ICOLS 2009 International Conference on Laser Spectroscopy, Kussharo, Hokkaido, Japan.
  • 12. Bouilleret, V., L. Cardamone, et al. (2009). "Progressive brain changes on serial manganese-enhanced MRI following traumatic brain injury in the rat." J Neurotrauma 26.
  • 13. Bouilleret, V., L. Cardamone, et al. (2009). Progressive functional and structural brain changes on serial manganese-enhanced MRI acquisition following traumatic brain injury in the rat. International Epilepsy Congress, Budapest
  • 14. Cannon, E. and J. Davis (2009). Ultrafast Spectroscopy of Carotenoids. KOALA (Konference on Optics And Laser Applications) Student Conference, University of Sydney.
  • 15. Castelletto, S., A. Roberts, et al. (2009). "Correlated imaging visibility using a parametric down-conversion source seeded with partially coherent stimulation." Journal of the Optical Society of America B 26: 1221–1227.
  • 16. Chan, N. Y., X. Hao, et al. (2009). "Aggregation of Water Soluble Conjugated Polymers in Couette Shear Flow." A, J. Phys. Chem. B 113 13138-13141.
  • 17. Chen, B., R. A. Dilanian, et al. (2009 ). "Multiple Wavelength diffractive imaging." Physical Review A 79: 023809 (4 pages).
  • 18. Chen, Y. P., J. Hitchcock, et al. (2009). "Experimental studies of Bose-Einstein condensates in disorder." Physica D: Nonlinear Phenomena 238: 1321-1325.
  • 19. Curwood, E., H. M. Quiney, et al. (2009). Imaging large biomolecules using femtosecond x-ray sources. KOALA (Konference on Optics And Laser Applications) 2009 Student Conference, University of Sydney.
  • 20. Dao, L. V., K. B. Dinh, et al. (2009). "Generation of extreme ultraviolet radiation with a Bessel-Gaussian beam." Appl. Phys. Lett 95: 131114
  • 21. Davis, J. and C. Jagadish (2009). "Ultrafast spectroscopy of ZnO/ZnMgO quantum wells." Laser and Photonics Review 3: 85-96.
  • 22. Davis, J. A., L. V. Dao, et al. (2009). Noninterferometric two-dimensional fourier transform spectroscopy. Ultrafast Phenonena XVI
  • 23. de Koning-Ward, T. F., P. R. Gilson, et al. (2009). "A newly discovered protein export machine in malaria parasites." Nature 459: 945-9.
  • 24. Dedeurwaerdere, S., M.-C. Gregoire, et al. (2009). "In-vivo imaging characteristics of two fluorinated flumazenil radiotracers in the rat." European Journal of Nuclear Medicine and Molecular Imaging 36(6): 958-65.
  • 25. Dilanian, R. A., B. Chen, et al. (2009). "Diffractive Imaging Using a Polychromativ High-Harmonic Generation Soft-X-Ray Source." J. Appl. Phys 106: 023110.
  • 26. Dubey, A. K., P. R. Bharadwaj, et al. (2009). "Alzheimer’s amyloid beta rescues yeast from hydroxide toxicity." J. Alzheimer’s Dis. 18(31-33).
  • 27. Eshtiaghi, N., B. Arhatari, et al. (2009). "Producing hollow granules from hydrophobic powders in high-shear mixerGranulators " Advanced Powder Technology Journal 20 558-566.
  • 28. Flewett, S., H. M. Quiney, et al. (2009). ">Extracting coherent modes from partially coherent wavefields." Optics Letters 34 (14 ): 2198-2200.
  • 29. Flewett, S., H. M. Quiney, et al. (2009). Direct measurement of the coherent modes of a partially coherent wavefield. ACOLS ACOFT 09 Proceedings of Australasian Conference on Optical Fibre Technology.
  • 30. Fu, Y., N. Klonis, et al. (2009). "A phosphatidylcholine-BODIPY 581/591 conjugate allows mapping of oxidative stress in P. falciparum-infected erythrocytes." Cytometry Part A 75A(5): 390-404.
  • 31. Gan, K., Y. Liu, et al. (2009). Hippocampal neuroplasticity in traumatic brain injury: Relationship to post-traumatic epilepsy. Australian Neuroscience Society.
  • 32. Gebert, N., A. S. Joshi, et al. (2009). "Mitochondrial cardiolipin involved in outer membrane protein biogenesis: implications for Barth syndrome." Current Biology 19 (24): 2133-9.
  • 33. Georgy, S. R., C. N. Pagel, et al. (2009). "Proteinase-activated receptor-2 and mouse osteoblasts: regulation of cell function and lack of specificity of PAR2-activating peptides." Clinical and Experimental Pharmacology and Physiology 37: 328-336.
  • 34. Ghanbari, S., B. Blakie, et al. (2009). "Superfluid to Mott insulator quantum phase transition in a 2D permanent magnetic lattice." Eur. Phys. J. B 70: 305-310.
  • 35. Gill, J., M. Yogavel, et al. (2009). "Crystal structure of malaria parasite nucleosome assembly protein: distinct modes of protein localization and histone recognition." J Biol Chem 284: 10076-10087.
  • 36. Glenister, F. K., K. M. Fernandez, et al. (2009). "Functional alteration of red blood cells by a mega-Dalton protein of P. falciparum. Blood." 113((4)): 919-928.
  • 37. Gureyev, T. E., S. C. Mayo, et al. (2009). "Refracting Röntgen's rays: Propagation-based X-ray phase contrast for biomedical imaging." J.Appl.Phys. 105: 102005-1 - 102005-12.
  • 38. Hall, C. R., L. V. Dao, et al. (2009). "Recombination dynamics and screening of the internal electric field in ZnOÕZnxMg1−xO multiple quantum wells." PHYSICAL REVIEW B 80(235316): 235316-1 - 235316-6.
  • 39. Hanssen, E., C. Knoechel, et al. (2009). "Whole cell Imaging of Plasmodium falciparum blood stages." Microscopy and Microanalysis 15: 866-867.
  • 40. Hao, X., N. Y. Chan, et al. (2009). "Conformational Changes and Photophysical Behavior in Poly[2-methoxy-5-(2′-ethyl-hexyloxy)-1,4-phenylene vinylene] Thin Films Cast under an Electric Field" J. Phys. Chem. C 113 11657-11661
  • 41. Hao, X., T. Ryan, et al. (2009). "Molar Mass Determination of Water-Soluble Light-Emitting Conjugated Polymers by Fluorescence-Based Analytical Ultracentrifugation." Macromolecules 42: 2737-2740.
  • 42. Henderson, C. A., G. J. Williams, et al. (2009). "Astigmatic phase retrieval: an experimental demonstration." Optics Express 17(14): 11905 - 11915.
  • 43. Hodder, A. N., A. G. Maier, et al. (2009). "Analysis of structure and function of the giant protein Pf332 in Plasmodium falciparum." Mol Microbiol 71: 48-65.
  • 44. Hogan, R. E., V. Bouilleret, et al. (2009). "MRI-based large deformation high dimensional mapping of the hippocampus rats: Development and validation of the technique." Journal of Magnetic Resonance Imaging 29: 1027-34.
  • 45. Hulet, R. G., D. Dries, et al. (2009). Tunable Interactions in a Bose-Einstein Condensate of Lithium: Photoassociation and Disorder-Induced Localization. Proceedings of the XXI International Conference on Atomic Physics, Singapore, World Scientific Publishing Co.
  • 46. Jasperse, M. and R. E. Scholten (2009). Two-color relative intensity squeezing using four-wave mixing system in rubidium. ICOLS 2009 (International Conference on Laser Spectroscopy), Kussharo, Hokkaido, Japan.
  • 47. Junker, M., S. Bell, et al. (2009). Ion bunches from a cold atom source. ACOLS/ACOFT 2009, Australasian Conference on Optical Fibre Technology, Adelaide
  • 48. Junker, M., S. Bell, et al. (2009). Ultracold plasma electron source ACOLS/ACOFT 2009 Proceedings of Australasian Conference on Optical Fibre Technology.
  • 49. Klonis, N. and L. Tilley (2009). Monitoring molecular dynamics in live cells using fluorescence photobleaching. Fluorescence Applications in Biotechnology and Life Sciences (Book chapter): pp 1-25.
  • 50. Lazarou, M., S. M. Smith, et al. (2009). "Assembly of nuclear DNA encoded subunits into mitochondrial complex IV and their preferential integration into supercomplex forms in patient mitochondria." FEBS J. . 276 6701-6713.
  • 51. Lazarou, M., D. R. Thorburn, et al. (2009). "Assembly of mitochondrial complex I and defects in disease." BBA - Molecular Cell Research (review) 1793: 78-88.
  • 52. Lee-Young, R. S., B. J. Canny, et al. (2009). "AMPK activation is fiber type specific in human skeletal muscle: effects of exercise and short-term exercise training." Journal of Applied Physiology 107: 283-9.
  • 53. Liu, D. S. H., T. J. O’Brien, et al. (2009). "Laminar specific changes in GABAA/cBZR and mossy fibre sprouting in the hippocampus during and following amygdala kindling epileptogenesis in the rat." Neurobiology of Disease 35: 337-347.
  • 54. Maier, A. G., J. Baum, et al. (2009). "Polymorphisms in erythrocyte binding antigens 140 and 181 affect function and binding but not receptor specificity in Plasmodium falciparum." Infect Immun 77: 1689-1699.
  • 55. Maier, A. G., B. M. Cooke, et al. (2009). "Malaria parasite proteins that remodel the host erythrocyte." Nature Reviews Microbiology 7(Nature Reviews Microbiology 7, 341-354. (invited review, IF: 14.959). In special issue on Microbial Host Cell Subversion. Featured on Front Cover): 341-354
  • 56. Mcculloch, A., D. Sheludko, et al. (2009). Single-plane phase imaging of cold atoms. ACOLS/ACOFT 2009, Proceedings of Australasian Conference on Optical Fibre Technology
  • 57. McCulloch, A., J., D. V. Sheludko, et al. (2009). Single-Plane Phase Imaging of Cold Atoms. KOALA (Konference on Optics And Laser Applications) Student Conference, University of Sydney.
  • 58. McKenzie, M., M. Lazarou, et al. (2009). "Analysis of respiratory chain complex assembly using radiolabeled nuclear- and mitochondrial-encoded subunits." Methods Enz 456: 321-339.
  • 59. McKimmie, L. J. (2009). Ultrafast Dynamics of CdSe Core/Shell Nanocrystals: A 3-Pulse Photon Echo Peakshift Study - 147. ACOLS ACOFT 09 Proceedings of Australasian Conference on Optical Fibre Technology, Melbourne.
  • 60. Meehan, A. J., P. Bedggood, et al. (2009). High Resolution Wavefront Sensing and Mirror Control for Vision Science by Quantitative Phase Imaging. Frontiers in Optics, OSA Technical Digest (CD) (Optical Society of America, 2009), paper JWB5. , San Jose, California.
  • 61. Myers, D. E., C. G. Ryan, et al. (2009). High-definition mapping of trace metal elements in the hippocampus in a model of closed-head traumatic brain injury. Trauma Melbourne 2009
  • 62. Myers, D. E., C. G. Ryan, et al. (2009). X-ray Fluorescence Microscopy of brain slices: Spatial mapping of metal elements for study of neurodegenerative diseases. Australian Synchrotron International Conference on Synchrotron Radiation Instrumentation, Melbourne.
  • 63. Nugent, K. A. (2009). "Caught in a spin." Nature Physics 5: 17.
  • 64. Nugent, K. A. (2009). "Optical Measurement Using the Relationship between Intensity and Phase." Jap. J. Optics 30: 503-509
  • 65. Nuttall, S. D., J. N. Vargehse, et al. (2009). Protein engineering of Amyloid-B familial mutations implicated in Alzheimer’s Disease. Lorne Protein Conference, 8-12 February 2009, Lorne, Victoria, Australia.
  • 66. Pham, H., A. A. Ramp, et al. (2009). "The astrocytic response in early experimental autoimmune encephalomyelitis occurs across both the grey and white matter compartments." J Neuroimmunol 208: 30-39.
  • 67. Proellocks, N. I., L. M. Kats, et al. (2009). "Characterisation of PfRON6, a Plasmodium falciparum rhoptry neck protein with a novel cystein-rich domain." Int J Parasitol 39((6)): 683-692.
  • 68. Putkunz, C. T. and A. G. Peele (2009). "Detailed simulations of a Lobster-eye telescope." Optics Express 17 14156 - 14165
  • 69. Quiney, H. and O. Ponomarenko (2009). Core-electron localization effects in a diatomic molecule interacting with intense ultrashort-pulse XUV radiation: Quantum-dynamic simulations. ACOLS ACOFT 09 Proceedings of Australasian Conference on Optical Fibre Technology, Melbourne, M Hamilton.
  • 70. Reid, C. A., B. E. Adams, et al. (2009). "Excitotoxic-mediated transcriptional decreases in HCN2 channel function increase network excitability in CA1." Experimental Neurology 219: 249-257.
  • 71. Saliba, S. D., M. Junker, et al. (2009). "Mode stability of external cavity diode lasers" Applied Optics 48(35 ): 6692-6700.
  • 72. Saliba, S. D., H. Schempp, et al. (2009). Coherent excitation effects in ultra-cold Rydberg gases. ICOLS (International Conference on Laser Spectroscopy), Kussharo, Hokkaido, Japan.
  • 73. Saliba, S. D. and R. E. Scholten (2009). "Linewidths below 100kHz with external cavity diode lasers" Applied Optics 48 ((36) ): 6961-6966.
  • 74. Schempp, H., C. Giese, et al. (2009). Autler-Townes Splitting in an inverted three-level system using Rydberg gases. German Physical Society Spring Meeting of the Section AMOP, Hamburg, Germany.
  • 75. Scholten, R. E., Bell, S.C., Sheludko, D.V., White, J.D., Turner, L.D., Meijer, T., Smeets, B., Jeppesen, M., Hofmann, C.S., Jasperse, M. (2009). Quantum Coherence in the Rubidium 5S – 5P – 5D Ladder System: Applications in Frequency Conversion, Imaging, and Squeezing. New Trends in Quantum Coherence and Nonlinear Optics, Horizons in World Physics. 263.
  • 76. Sheludko, D. V., A. J. McCulloch, et al. (2009). Single-shot diffractive imaging of inhomogeneous cold atom clouds using electromagnetically induced transparency. KOALA (Konference on Optics And Laser Applications) 2009 Student Conference, 23rd-27th Nov, University of Sydney.
  • 77. Singh, M., R. McLean, et al. (2009). "Dynamics of reflection of ultra-cold atoms from a periodic one-dimensional magnetic lattice potential." Phys. Rev. A 79: 053407.
  • 78. Smith, T. A., C. N. Lincoln, et al. (2009). Time-Resolved Fluorescence in Microscopy in Fluorescence Applications in Biotechnology and Life Sciences. E. M. G. (Ed.), Wiley-Blackwell: 195-221.
  • 79. Streltsov, V. A., J. N. Varghese, et al. (2009). Crystallographic models for Amyloid-B oligomer formation in Alzheimer’s Disease’. Lorne Protein Conference, 8 -12 February, Lorne, Victoria, Lorne, Victoria, Australia.
  • 80. Teichmann, S., B. Chen, et al. (2009). Efficient and highly coherent extreme-ultraviolet high-harmonic source Ultrafast Phenonena XVI.
  • 81. Teichmann, S., B. Chen, et al. (2009). "Spectral characteristics across the spatial profile of a high-harmonic beam." J. Phys. D: Appl. Phys 42: 135108.
  • 82. Teichmann, S., P. Hannaford, et al. (2009). "Phase-matched emission of few high-harmonic orders from a helium gas cell." Appl. Phys. Lett. 94: 171111.
  • 83. Van Buskirk, K. M., M. T. O'Neill, et al. (2009). "Preerythrocytic, live-attenuated Plasmodium falciparum vaccine candidates by design." Proc Natl Acad Sci U S A 106: 13004-13009.
  • 84. Vine, D. J., D. M. Paganin, et al. (2009). "Deterministic retrieval of complex Green's functions using hard X-rays" Physical Review Letters, 102 043901 (2009) - [Work done before joining CXS].
  • 85. Vine, D. J., G. J. Williams, et al. (2009). "Ptychographic Fresnel coherent diffractive imaging." Phys. Rev. A 80: 063823 (5 pages).
  • 86. Vivash, L., S. Dedeurwaerdere, et al. (2009). [18F]-Flumazenil-PET imaging in an animal model of temporal lobe epilepsy. CRC-BID Education Seminars.
  • 87. Webster, G. T., K. de Villiers, et al. (2009). "Discriminating the intraerythrocytic lifecycle stages of the malaria parasite using synchrotron FT-IR microspectroscopy and an artificial neural network." Analytical Chemistry 81((7)): 2516-24.
  • 88. Weidemueller, M., C. Hofmann, et al. (2009). Interactions in an ultra-cold gas of rydberg atoms. ICOLS (International Conference on Laser Spectroscopy), Kussharo, Hokkaido, Japan.
  • 89. Wen, X., L. V. Dao, et al. (2009). "Ultrafast transient grating spectroscopy in silicon quantum dots." Journal of Nanoscience and Nanotechnology 9: 4575-4579
  • 90. Wen, X., J. Davis, et al. (2009). "Thermal quenching of photoluminescence in ZnO/ZnMgO multiple quantum wells following oxygen implantation and rapid thermal annealing" Journal of Luminescence 129: 153-157.
  • 91. Wen, X. M., C. N. Lincoln, et al. (2009). "Characterization of the back surface reflection in InP using femtosecond luminescence up-conversion." J. Phys. D: Appl. Phys 42(045115).
  • 92. Wen, X. M., T. A. Smith, et al. (2009). "Observation of back-surface reflected luminescence in GaAs excited by ultrashort pulses." Appl. Phys. Lett 94(102101).
  • 93. Whitehead, L. W., G. J. Williams, et al. (2009). "Diffractive Imaging Using Partially Coherent X Rays." Phys. Rev. Lett. 103(24): 243902.
  • 94. Zatsepin, N. A., A. Y. Nikulin, et al. (2009). Advances in real time x-ray diffraction in situ nanoscopy. 2nd School and Workshop on X-Ray Micro and Nanoprobes (XMNP 2008), Salerno, Italy.

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