CXS - Refereed Publications - 2012

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  • Brian Abbey, Ruben A. Dilanian (2012) "Femtosecond X-ray Laser induced transient electronic phase change observed in fullerene C."
  • Sheila Akinyi, Eric Hanssen (2012) "A 95 kDa protein of Plasmodium vivax and P. cynomolgi visualized by three-dimensional tomography in the caveola–vesicle complexes (Schüffner’s dots) of infected erythrocytes is a member of the PHIST family." Molecular Microbiology (2012) 84(5), 816–831
  • B.J. Allitt, S.J. Morgan, S. Bell, D.A.X. Nayagam, B. Arhatari, G.M. Clark, A.G. Paolini (2012) "Midbrain responses to micro-stimulation of the cochlea using high density thin-film arrays." Hearing Research 287 (2012) 30e42
  • Andrew Aquila, Mark S. Hunter, R. Bruce Doak, Richard A. Kirian, (2012) "Time-resolved protein nanocrystallography using an X-ray free-electron laser." OPTICS EXPRESS 2706 Vol. 20, No. 3 (2012)
  • B.D. Arhatari, A.R. Harris (2012) "Enhanced x-ray imaging for a thin film cochlear implant with metal artefacts using phase retrieval tomography." Journal of Applied Physics 111, 114904 (2012) doi: 10.1063/1.4724343
  • Benedicta D. Arhatari, Grant van Riessen, and Andrew Peele (2012) "Polychromatic X-ray tomography: direct quantitative phase reconstruction." Optics Express, Vol. 20, Issue 21, pp. 23361-23366 (2012)
  • Michael J. Baker, Ved P. Mooga, Bernard Guiard, Thomas Langer, Michael T. Ryan and Diana Stojanovski (2012) "Impaired Folding of the Mitochondrial Small TIM Chaperones Induces Clearance by the i-AAA Protease." Elsevier J. Mol. Biol. (2012) 424, 227–239
  • Anton Barty, Carl Caleman and Henry N. Chapman (2012) "Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements." NATURE PHOTONICS | VOL 6 | JANUARY 2012 | www.nature.com/naturephotonics
  • J.P. Beardmore, A.J. Palmer, C.G.C.H.M. Fabrie, K.A.H. van Leeuwen, R.T. Sang (2011) "Characterisation of the growth of a carbonaceous film on silicon." Elsevier Thin Solid Films 520 (2012) 2414–2417
  • M. Bernabeu, F. J. Lopez, M. Ferrer (2012) "Functional analysis of Plasmodium vivax VIR proteins reveals different subcellular localizations and cytoadherence to the ICAM-1 endothelial receptor." Cellular Microbiology (2012) 14(3), 386–400
  • Sébastien Boutet, Lukas Lomb, Garth J. Williams (2012) "High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography." SCIENCE 20 JULY 2012 VOL 337 www.sciencemag.org
  • Ingo L. Brand, Srgjan Civciristov, Nicole L. Taylor (2012) "Caspase Inhibitors of the P35 Family Are More Active When Purified from Yeast than Bacteria." PLoS ONE www.plosone.org 1 June 2012 Volume 7 Issue 6 e39248
  • Carl Caleman, Nicusor Tîmneanu, Andrew V. Martin (2012) "Modeling of XFEL induced ionization and atomic displacement in protein nanocrystals." Proc. SPIE 8504, X-Ray Free-Electron Lasers: Beam Diagnostics, Beamline Instrumentation, and Applications, 85040H (October 17, 2012); doi:10.1117/12.929294
  • Tessa R. Calhoun, Jeffrey A. Davis c, Matthew W. Graham, Graham R. Fleming (2012) "The separation of overlapping transitions in b-carotene with broadband 2D electronic spectroscopy." Elsevier Chemical Physics Letters 523 (2012) 1–5
  • F. Capotondi, E. Pedersoli, M. Kiskinova, A.V. Martin,2 M. Barthelmess, and H. N. Chapman (2012) "A scheme for lensless X-ray microscopy combining coherent diffraction imaging and differential corner holography." OPTICS EXPRESS 25152 22 October 2012 Vol. 20, No. 22
  • Sofia Caria, Srishti Chugh, Duong Nhu, Guillaume Lesseneb, and Marc Kvansakula (2012) "Crystallization and preliminary X-ray characterization of Epstein–Barr virus BHRF1 in complex with a benzoylurea peptidomimetic." Acta Crystallographica Section F Structural Biology and Crystallization Communications (2012). F68, 1521–1524
  • MR Carpinelli, AK Wise, BD Arhatari, P Bouillet, SSM Manji, MG Manning, AA Cooray, and RA Burt (2012) "Anti-apoptotic gene Bcl2 is required for stapes development and hearing." NPG Citation: Cell Death and Disease (2012) 3, e362; doi:10.1038/cddis.2012.100 www.nature.com/cddis
  • Bo Chen, Brian Abbey, Ruben Dilanian, Eugeniu Balaur, Grant van Riessen (2012) "Diffraction imaging: The limits of partial coherence." PHYSICAL REVIEW B 86, 235401 (2012)
  • Charlotte E. Conn, Connie Darmanin, Xavier Mulet, Sophie Le Cann (2012) "High-throughput analysis of the structural evolution of the monoolein cubic phase in situ under crystallogenesis conditions/pub}." Soft Matter, 2012, 8, 2310 www.rsc.org/softmatter
  • Charlotte E. Conn, Connie Darmanin, Xavier Mulet, Adrian Hawleyd and Calum J. Drummond (2012)"{pub}Effect of lipid architecture on cubic phase susceptibility to crystallisation screens†." Cite this: Soft Matter, 2012, 8, 2884 www.rsc.org/softmatter
  • A. J. D’Alfonso, A. J. Morgan, A. V. Martin, H. M. Quiney and L. J. Allen (2012) "Fast deterministic approach to exit-wave reconstruction." PHYSICAL REVIEW A 85, 013816 (2012)
  • Lap V. Dao, Chris Hall, Hoang L. Vu, Khoung B. Dinh, Eugenui Balaur (2012) "Phase-matched generation of highly coherent radiation in water window region." APPLIED OPTICS / Vol. 51, No. 18 / 20 June 2012
  • L.V. Dao, H. L. Vu, K.B. Dinh, N. Gaffney, E. Balaur (2012) "Generation of Coherent Radiation in the Water Window." Research in Optical Sciences 2012 OSA
  • Natalia Davydova, Victor A. Streltsov, Sally Roufail, George O. Lovrecz (2012) "Preparation of human vascular endothelial growth factor-D for structural and preclinical therapeutic studies." Elsevier Protein Expression and Purification 82 (2012) 232–239
  • Megan K. Dearnley, Jeffrey A. Yeoman, Eric Hanssen, Shannon Kenny (2012) "Origin, composition, organization and function of the inner membrane complex of Plasmodium falciparum gametocytes." Journal of Cell Science JCS ePress online publication date 10 February 2012
  • Daniel A. Dias, Trevor A. Smith, Kenneth P. Ghiggino, Geoffrey R. Scollary (2012) "The role of light, temperature and wine bottle colour on pigment enhancement in white wine." Elsevier Food Chemistry 135 (2012) 2934–2941
  • R A Dilanian, C Darmanin, J N Varghese, S W Wilkins (2012) "A new approach for structure analysis of two-dimensional membrane protein crystals using X-ray powder diffraction data." Protein Science 2011 February; 20(2): 457–464
  • Ruben A. Dilanian, Victor A. Streltsov, Harry M. Quineya and Keith A. Nugent (2012) "Continuous X-ray diffractive field in protein nanocrystallography." Acta Crystallographica Section A Foundations of Crystallography (2013) A69, 108–118
  • Matthew W.A. Dixon, Megan K. Dearnley, Eric Hanssen, Tim Gilberger and Leann Tilley (2012) "Shape-shifting gametocytes: how and why does P. falciparum go banana-shaped?." Trends in Parasitology November 2012, Vol. 28, No. 11
  • Kirstin Elgass, Julian Pakay, Michael T. Ryan, Catherine S. Palmer (2012) "Recent advances into the understanding of mitochondrial fission." Biochim. Biophys. Acta (2012), doi:10.1016/j.bbamcr.2012.05.002
  • Vidana Epa, Victor Streltsov, Jose Varghese (2012)"Computational studies on the stability of C-Terminal Beta-Amyloid dimer and mutants." Poster Presenation 2012
  • L. T. Hall, G. C. G. Beart, E. A. Thomas, D. A. Simpson (2012) "High spatial and temporal resolution wide-field imaging of neuron activity using quantum NV-diamond." Scientific Reports 2, Article number: 401 doi:10.1038/srep00401
  • Eric Hanssen, Christian Knoechel, Megan Dearnley (2012) "Soft X-ray microscopy analysis of cell volume and hemoglobin content in erythrocytes infected with asexual and sexual stages of Plasmodium falciparum." Elsevier Journal of Structural Biology 177 (2012) 224–232
  • A. M. HESKES, C. N. LINCOLN, J. Q. D. GOODGER, E. WOODROW & T. A. SMITH (2012) "Multiphoton fluorescence lifetime imaging shows spatial segregation of secondary metabolites in Eucalyptus secretory cavities." Journal ofMicroscopy, Vol. 247, Pt 1 2012, pp. 33–42
  • F. Hofmann, B. Abbey, L. Connor, N. Baimpas (2012)" Imaging of grain-level orientation and strain in thicker metallic polycrystals by high energy transmission micro-bean LAUE HETL diffraction techniques." Int. J. Mat. Res. (formaly Z. Metallkd.) 103 (2012)
  • Felix Hofmann, Xu Song, Brian Abbey, Tea-Sung Jund and Alexander M. Korsunsky (2012) "High-energy transmission Laue micro-beam X-ray diffraction: a probe for intra-granular lattice orientation and elastic strain in thicker samples." J. Synchrotron Rad. (2012). 19, 307–318
  • B. Jenichen, J. Herfort, T. Hentschel, A. Nikulin, X. Kong and A. Trampert (2012) "Residual disorder and diffusion in thin Heusler alloy films." arXiv:1206.2242v1 [cond-mat.mes-hall] 11 Jun 2012
  • B. Jenichen, U. Jahn, A. Nikulin, R. Hey, P. V. Santos and K.-J. Friedland (2012) "Inhomogeneous microstrain in cylindrical semiconductor heterostructures and its influence on the adiabatic motion of electrons." PHYSICAL REVIEW B 86, 155309 (2012)
  • Linda C Johansson, David Arnlund, Thomas A White, Gergely Katona1 (2012) "Lipidic phase membrane protein serial femtosecond crystallography." Nature methods Vol.9 NO.3 March 2012
  • Stephan Kassemeyer, Jan Steinbrener, Lukas Lombr (2012) "Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.." OPTICS EXPRESS 4149 13 February 2012 Vol. 20, No. 4
  • Bi-Xia Kea, Salvatore Pepea, David R. Grubba (2012) "{pubTissue-specific splicing of an Ndufs6 gene-trap insertion generates a mitochondrial complex I deficiency-specific cardiomyopathy{/pub}.." PNAS April 17, 2012 vol. 109 no. 16 6165–6170
  • D. Kielpinski and O. Gat (2012) "Phase-coherent repetition rate multiplication of a mode-locked laser from 40 MHz to 1 GHz by injection locking.." OPTICS EXPRESS 2717, O30 January 2012, Vol. 20, No. 3
  • D. Kielpinski, D. Kafri, M. J. Woolley, G. J. Milburn, and J. M. Taylor (2012) "Quantum Interface between an Electrical Circuit and a Single Atom.." PHYSICAL REVIEW LETTERS 0031-9007/12/108(13)/130504(4)
  • Koopmann R, Cupelli K, Redecke L, Nass K, Deponte DP (2012) "In vivo protein crystallization opens new routes in structural biolo.." PubMed - NCBI http://www.ncbi.nlm.nih.gov/pubmed/22286384 23/04/2013
  • Alexander M. Korsunsky, Felix Hofmann, Brian Abbey, Xu Song, Jonathan P. Belnoue, Cristian Mocuta, Igor Dolbnya (2012) "Analysis of the internal structure and lattice (mis)orientation in individual grains of deformed CP nickel polycrystals by synchrotron X-ray micro-diffraction and microscopy.." Elsevier International Journal of Fatigue 42 (2012) 1–13
  • O. Krupin, M. Trigo, W. F. Schlotter, M. Beye, F. Sorgenfrei (2012) "Temporal cross-correlation of x-ray free electron and optical lasers using soft x-ray pulse induced transient reflectivity.." OPTICS EXPRESS 11396 / 7 May 2012 / Vol. 20, No. 10
  • D. E. Laban, A. J. Palmer, W. C. Wallace, N. S. Gaffney (2012) "Extreme Ultraviolet Interferometer Using High-Order Harmonic Generation from Successive Sources.." PHYSICAL REVIEW LETTERS 109, 263902 (2012)
  • Fung T. Lay, Grant D. Mills, Mark D. Huletta and Marc Kvansakul (2012) "Crystallization and preliminary X-ray crystallographic analysis of the plant defensin NaD1/pub}.." Acta Crystallographica Section F Structural Biology and Crystallization Communications (2012). F68, 85–88
  • Fung T. Lay, Grant D. Mills, Ivan K. H. Poon, Nathan P. Cowieson (2012) "{pub}Dimerization of Plant Defensin NaD1 Enhances Its Antifungal Activity.." THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 287, NO. 24, pp. 19961–19972, June 8, 2012
  • Fung T. Lay, Prem K. Veneer, Mark D. Huletta, and Marc Kvansakul (2012) "Recombinant expression and purification of the tomato defensin TPP3 and its preliminary X-ray crystallographic analysis.." Acta Crystallographica Section F Structural Biology and Crystallization Communications (2012). F68, 314–316
  • Dillon W. Leong, Jasper C. Komen, Chelsee A. Hewitt, Estelle Arnaud (2012) "Proteomic and Metabolomic Analyses of Mitochondrial Complex I-deficient Mouse Model Generated by Spontaneous B2 Short Interspersed Nuclear Element (SINE) Insertion into NADH Dehydrogenase (Ubiquinone) Fe-S Protein 4 (Ndufs4) Gene.." THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 287, NO. 24, pp. 20652–20663, June 8, 2012
  • N. D. Loh, C. Y.Hampton, A. V. Martin, D. Starodub, R. G. Sierra1 (2012) "Fractalmorphology, imaging andmass spectrometry of single aerosol particles in flight.." 28 JUNE 2012 | VOL 486 | NATURE | 513
  • Mauro Maiorca a,b Q1 , Eric Hanssen, Edmund Kazmierczak, Bohumil Maco (2012) "Improving the quality of electron tomography image volumes using pre-reconstruction filtering.." Elsevier Journal of Structural Biology 9 June 2012 YJSBI 6236
  • A.V. Martin, N.D. Loh, C.Y. Hampton, R.G. Sierra, F. Wang (2012) "Femtosecond dark-field imaging with an X-ray free electron laser.." OPTICS EXPRESS 13501 / 4 June 2012 / Vol. 20, No. 12
  • A. V. Martin, F. Wang, N. D. Loh, T. Ekeberg, F. R. N. C. Maia (2012) "Noise-robust coherent diffractive imaging with a single diffraction pattern.." OPTICS EXPRESS 16650 / 16 July 2012 / Vol. 20, No. 15
  • Jennifer L. McKimm-Breschkin, Christina Rootes, Peter G. Mohr, Susan Barrett, and Victor A. Streltsov1 (2012) "In vitro passaging of a pandemic H1N1/09 virus selects for viruses with neuraminidase mutations conferring high-level resistance to oseltamivir and peramivir, but not to zanamivir.." J Antimicrob Chemother 2012; 67: 1874–1883
  • PMasakazu Mimaki, Xiaonan Wang, Matthew McKenzie, David R. Thorburn, Michael T. Ryan (2012) "Understanding mitochondrial complex I assembly in health and disease.." Elsevier Biochimica et Biophysica Acta 1817 (2012) 851–862
  • B. C. Mulkerin, C. J. Bradly, H. M. Quiney and A. M. Martin (2012) "Universality and itinerant ferromagnetism in rotating strongly interacting Fermi gases.." PHYSICAL REVIEW A 86, 053631 (2012)
  • Toru Okamoto, Stephanie Campbell, Ninad Mehta, John Thibault, Peter M. Colman, Michele Barry, David C. S. Huang and Marc Kvansakul (2012) "Sheeppox Virus SPPV14 Encodes a Bcl-2-Like Cell Death Inhibitor That Counters a Distinct Set of Mammalian Proapoptotic Proteins.." J. Virol. 2012, 86(21):11501. DOI: 10.1128/JVI.01115-1
  • I. Peterson, B. Abbey, C.T. Putkunz, D.J. Vine (2012) "Nanoscale Fresnel coherent diffraction imaging tomography using ptychography.." OPTICS EXPRESS 24678 / 22 October 2012 / Vol. 20, No. 22
  • Corey T. Putkunz, Adrian J. D’Alfonso, Andrew J. Morgan, Matthew Weyland, Christian Dwyer (2012) "Atom-Scale Ptychographic Electron Diffractive Imaging of Boron Nitride Cones." PHYSICAL REVIEW LETTERS 108, 073901 (2012)
  • GJP Rautureau1, M Yabal, H Yang, DCS Huang, M Kvansakul, and MG Hinds (2012) "The restricted binding repertoire of Bcl-B leaves Bim as the universal BH3-only prosurvival Bcl-2 protein antagonist." Citation: Cell Death and Disease (2012) 3, e443; doi:10.1038/cddis.2012.178
  • Lars Redecke, Karol Nass, Daniel P. DePonte, Thomas A. White, Dirk Rehders (2012) "Natively Inhibited Trypanosoma brucei Cathepsin B Structure Determined by Using an X-ray Laser." Science 339, 227 (2013); DOI: 10.1126/science.1229663
  • G. H. Richards, K. E. Wilk, P. M. G. Curmi, H. M. Quiney, and J. A. Davis (2012) "Coherent Vibronic Coupling in Light-Harvesting Complexes from Photosynthetic Marine Algae." The Journal of Physical Chemistry Letters 2012, 3, 272−277
  • G H Richards, K E Wilk, P M G Curmi, H M Quiney, and J A Davis (2012) "Excited state coherent dynamics in light-harvesting complexes from photosynthetic marine algae." JOURNAL OF PHYSICS B: ATOMIC, MOLECULAR AND OPTICAL PHYSICS 45 (2012) 154015 (8pp)
  • Michael T. Ryan & Diana Stojanovski (2012) "Mitofusins ‘bridge’ the gap between oxidative stress and mitochondrial hyperfusion." EUROPEAN MOLECULAR BIOLOGY ORGANIZATION Reports VOL 13 | NO 10 | 2012
  • Sebastian D. Saliba, Corey T. Putkunz, David V. Sheludko, Andrew J. McCulloch, Keith A. Nugent, and Robert E. Scholten (2012) "Spatial coherence of electron bunches extracted from an arbitrarily shaped cold atom electron source." The Optical Society Vol. 20, Iss. 4 — Feb. 13, 2012 pp: 3967–3974
  • W. F. Schlotter, J. J. Turner, M. Rowen, P. Heimann, M. Holmes (2012) "The soft x-ray instrument for materials studies at the linac coherent light source x-ray free-electron laser." Review of Scientific Instruments 83, 043107 (2012); doi: 10.1063/1.3698294
  • Pedro Serrano, Bill Pedrini, Biswaranjan Mohanty, Michael Geralt, Torsten Herrmann, Kurt Wu¨thrich (2012) "The J-UNIO protocol for automated protein structure determination by NMR in solution." J Biomol NMR (2012) 53:341–354
  • Colin J. R. Sheppard, Shan Shan Kou, and Christian Depeursinge (2012) "Reconstruction in interferometric synthetic aperture microscopy: comparison with optical coherence tomography and digital holographic microscopy." J. Opt. Soc. Am. A / Vol. 29, No. 3 / March 2012
  • TREVOR A. SMITH, LIISA M. HIRVONEN, CRAIG N. LINCOLN and XIAOTAO HAO (2012) "DEEP-UV CONFOCAL FLUORESCENCE IMAGING AND SUPER-RESOLUTION OPTICAL MICROSCOPY OF BIOLOGICAL SAMPLES." Journal of Innovative Optical Health Sciences Vol. 5, No. 4 (2012) 1250025 (9 pages)
  • D. Starodub, A. Aquila, S. Bajt, M. Barthelmess, A. Bart2, C. Bostedt (2012) "Single-particle structure determination by correlations of snapshot X-ray diffraction patterns." NATURE COMMUNICATIONS | 3:1276 | DOI: 10.1038/ncomms2288 |www.nature.com/naturecommunications
  • Diana Stojanovski, Maria Bohnert, Nikolaus Pfanner and Martin van der Laan (2012) "Mechanisms of Protein Sorting in Mitochondria." Cold Spring Harb Perspect Biol 2012; doi: 10.1101/cshperspect.a011320
  • Diana Stojanovski, Piotr Bragoszewski, Agnieszka Chacinska (2012) "The MIA pathway: A tight bond between protein transport and oxidative folding in mitochondria." Biochimica et Biophysica Acta 1823 (2012) 1142–1150
  • Daniel J. Thompson and Robert E. Scholten (2012) "Narrow linewidth tunable external cavity diode laser using wide bandwidth filter." Rev. Sci. Instrum. 83, 023107 (2012); doi: 10.1063/1.3687441
  • Elena J. Tucker, Masakazu Mimaki, Alison G. Compton, Matthew McKenzie, Michael T. Ryan, and David R. Thorburn (2012) "Next-Generation Sequencing in Molecular Diagnosis: NUBPL Mutations Highlight the Challenges of Variant Detection and Interpretation." HUMAN MUTATION, Vol. 33, No. 2, 411–418, 2012
  • D. J. Vine, G. J. Williams, J. N. Clark, C. T. Putkunz, M. A. Pfeifer (2012) "An in-vacuum x-ray diffraction microscope for use in the 0.7–2.9 keV range." Rev. Sci. Instrum. 83, 033703 (2012); doi: 10.1063/1.3688655
  • Patricia M. Walden,a Begon Heras, Kai-En Chen, Maria A. Halili, Kieran Rimmer,b Pooja Sharma, Martin J. Scanlon and Jennifer L. Martin (2012) "The 1.2Â resolution crystal structure of TcpG, the Vibrio cholerae DsbA disulfide-forming protein required for pilus and cholera-toxin production." Acta Cryst. (2012). D68, 1290–1302 doi:10.1107/S0907444912026388
  • W. C. Wallace1, M. G. Pullen1, D. E. Laban1, A. J. Palmer, G. F. Hanne (2012) "Above-threshold ionization in atomic hydrogen using intense, few-cycle laser pulses." Journal of Physics: Conference Series 388 (2012) 032055 doi:10.1088/1742-6596/388/3/032055
  • Paul J. Whitea, Pascal Hickey, Linda Sze Tu, Stephen J. Headey, Martin J. Scanlon, Ben J. Boyd and Colin W. Pouton (2012) "Colloidal characteristics and formulation of pure protein particulate vaccine." Royal Pharmaceutical Society 2012 Journal of Pharmacy and Pharmacology, 64, pp. 1386–1393
  • Thomas A. White, Richard A. Kirian, Andrew V. Martin, Andrew Aquila (2012) "CrystFEL: a software suite for snapshot serial crystallography." J. Appl. Cryst. (2012). 45, 335–341 doi:10.1107/S0021889812002312
  • James D. White and Robert E. Scholten (2012) "Compact diffraction grating laser wavemeter with sub-picometer accuracy and picowatt sensitivity using a webcam imaging sensor." Rev. Sci. Instrum. 83, 113104 (2012); doi: 10.1063/1.4765744
  • B Ziaja1,, H N Chapman, R F¨austlin, S Hau-Riege, Z Jurek1, (2012) "Limitations of coherent diffractive imaging of single objects due to their damage by intense x-ray radiation." New Journal of Physics 14 (2012) 115015

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